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notes imaging science

OpenSPIM assembly

#OpenSPIM laser ready to be powered on #LISH2014

OpenSPIM assembly
Categories
biology notes science

Brachiopods and Japanese art

Morse 1902 - Observations on living Brachiopoda. Brachiopods and Japanese art.

I visited Japan solely for the purpose of studying the Brachiopoda of the Japanese seas, and this step led to my accepting the chair of zoology in the Imperial University at Tokyo. Gradually I was drawn away from my zoological work, into archaeological investigations, by the alluring problem of the ethnic affinities of the Japanese race. The fascinating character of Japanese art led to a study, first of the prehistoric and early pottery of the Japanese, and then to the collection and study of the fictile art of Japan. Inexorable fate finally entangled me for twenty years in a minute study of Japanese pottery. The results of this work are embodied in the Catalogue of Japanese Pottery, lately published by the Museum of Fine Arts, Boston. With this work off my hands, I turned back with eagerness to my early studies of the Brachiopoda (…) Japan is the home of the brachiopods.

Edward S. Morse, 1902. Observations on living Brachiopoda in Memoirs of the Boston Society of Natural History, 5(8): 313-386.

Citations from page 313, 374 and plate 41.

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science articles code

Search PLOS articles using DuckDuckGo

Last year I decided to experiment with DuckDuckHack, the developer platform for the search engine DuckDuckGo. The idea was to use the instant answers to find scientific articles as a quick Google Scholar shortcut.

It’s feasible, in principle, but I decided to try something simpler. A plugin that uses the PLOS API to search their articles and display in the instant answer box.

To use it you just need to add the word “plos” + keywords (example above). The result is a list of titles and dates of the five most-relevant articles with direct links. Hovering the mouse over a link will show the authors and which PLOS journal. This final format was simplified after the initial pull request and polished up in the second.

DuckDuckGo

The code is a simple Perl function that connects the PLOS API to DuckDuckGo, and a javascript function that handles the search response. The DDG community was quite friendly to help out with the code.

Since DuckDuckGo is less used than Google I guess the number of users might be low. Maybe I’m the only one… It would be amazing if it could query the whole scientific literature! But well, I like this little hack. I guess it’s the excitement of connecting services using APIs.

Categories
notes science

A galaxy for insight

By empowering readers and observers with transparent access to the means by which conclusions are reached, rather than assembling them in an audience to hear the Authorities deliver the catechism from on high, we are all of us becoming scientists in this way, entering into a democracy of the intellect that is already bearing spectacular fruit, not just at Wikipedia but through any number of collaborative projects, from the Gutenberg Project to Tor to Linux.

via theawl.com and @brunogola