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notes code

Djot (Beyond Markdown)

Djot is the potential successor to Markdown (the popular lightweight markup format for plain text files). It provides better-defined standards compared to the original Markdown, which make parsing easier while still keeping the sample principles of readability (see Beyond Markdown). It is being developed by John MacFarlane, the creator of CommonMark (the main Markdown specification) and Pandoc (the universal file type converter). Here’s […]

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notes biology microscopy

Mitotic waves on the Sächsische Zeitung

The mitotic waves made it onto the Sächsische Zeitung, a regional newspaper published in Dresden (thanks to Katrin Boes from MPI-CBG). They wrote a nice little piece about the video. I translated it to English (using DeepL…). You can read it below. Scientist receives coveted film award Dresden researcher turns little fruit flies into movie […]

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biology articles microscopy

Colormap for mitotic waves

In a recent email exchange, someone asked me what the colors in the video of mitotic waves mean and how did I get them. How the microscope technique results in the array of colors in the cells (purple to yellow and red). Could you briefly explain where the colors come from and how you visualised […]

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notes biology

Brachiopod Wnt paper now published

Our brachiopod Wnt paper has been peer-reviewed, was accepted, and is now published in BMC Biology! The article is open-access: Vellutini, B. C., Martín-Durán, J. M., Børve, A. & Hejnol, A. Combinatorial Wnt signaling landscape during brachiopod anteroposterior patterning. BMC Biol. 22, 1–23 (2024). https://doi.org/10.1186/s12915-024-01988-w

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notes biology microscopy

Mitotic Waves video wins Small World in Motion

My video of mitotic waves won Nikon’s 2024 Small World in Motion video competition! I’m thrilled 🎉 To learn more about the video, check out Nikon’s press release and their article for the series Masters of Microscopy. There’s also a blog post that I wrote a couple of years ago with some biological information and […]

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notes science

EuroEvoDevo Helsinki 2024

Last June, I went to the conference of the European Society for Evolutionary Developmental Biology, or EuroEvoDevo. It’s a meeting that I’ve been going to every edition for the past decade. This year it was hosted in Helsinki, Finland. The venue and organization were impeccable, and I thoroughly enjoyed the program overall. My feeling is […]