Categories

Code

Scripts, programs, and other types of source code that I wrote to help myself. The full list is on GitHub.

You can also read related posts.

Biodiversity

cifonauta
Marine biology image database by CEBIMar/USP https://github.com/nelas/cifonauta

livingbib
Browse references by taxon (kind of). htttps://github.com/nelas/livingbib

worms.py
Python library to access the WoRMS web services. https://github.com/nelas/worms.py

itis.py
Python library to access ITIS web services. https://github.com/nelas/itis.py

Image processing

imagej-macros
Collection of macros for image processing in ImageJ/Fiji https://github.com/nelas/imagej-macros

color-blind-luts
Color-blind friendly lookup tables for ImageJ https://github.com/nelas/color-blind-luts

WormBox
Fiji/ImageJ plugin to help data acquisition and measurement of linear distances. https://github.com/nelas/WormBox

gif.sh
Convert videos to high-quality animated GIFs https://github.com/nelas/gif.sh

quick-set-scale
ImageJ macro to conveniently (and quickly) change the scale of opened images. https://github.com/nelas/quick-set-scale

Bioinformatics

sra.py
Search & Fetch records from NCBI’s Sequence Read Archive. https://github.com/nelas/sra.py

blaster
Find loci of interest using a batch of candidate genes. https://github.com/nelas/blaster

simi.py
Python library to access cell lineage data from Simi BioCell https://github.com/nelas/simi.py

Text processing

mestre-em-latex
Modelo em LaTeX para dissertações e teses acadêmicas https://github.com/nelas/mestre-em-latex

zim-custom-tools
Collection of useful custom tools for Zim Desktop Wiki
https://github.com/nelas/zim-custom-tools