Scripts, tools, libraries, plugins, databases, and other types of source code that I wrote and maintain. You can browse all repositories on GitHub or read some related posts in the blog.
Biodiversity
cifonauta
Marine biology image database by CEBIMar/USP https://github.com/bruvellu/cifonauta
livingbib
Browse references by taxon (kind of). htttps://github.com/bruvellu/livingbib
worms.py
Python library to access the WoRMS web services. https://github.com/bruvellu/worms.py
itis.py
Python library to access ITIS web services. https://github.com/bruvellu/itis.py
Image processing
imagej-macros
Collection of macros for image processing in ImageJ/Fiji https://github.com/bruvellu/imagej-macros
color-blind-luts
Color-blind friendly lookup tables for ImageJ https://github.com/bruvellu/color-blind-luts
WormBox
Fiji/ImageJ plugin to help data acquisition and measurement of linear distances. https://github.com/bruvellu/WormBox
gif.sh
Convert videos to high-quality animated GIFs https://github.com/bruvellu/gif.sh
quick-set-scale
ImageJ macro to conveniently (and quickly) change the scale of opened images. https://github.com/bruvellu/quick-set-scale
Bioinformatics
sra.py
Search & Fetch records from NCBI’s Sequence Read Archive. https://github.com/bruvellu/sra.py
blaster
Find loci of interest using a batch of candidate genes. https://github.com/bruvellu/blaster
simi.py
Python library to access cell lineage data from Simi BioCell https://github.com/bruvellu/simi.py
Text processing
mestre-em-latex
Modelo em LaTeX para dissertações e teses acadêmicas https://github.com/bruvellu/mestre-em-latex
zim-custom-tools
Collection of useful custom tools for Zim Desktop Wiki
https://github.com/bruvellu/zim-custom-tools